Code analyser for Bioinformatics
Abstract & Details
Research Area
Computer Engineering
Keywords
antiSMASH
Biopython
SQLite.
Gen Bank
Abstract
“antiSMASH” is a great tool to predict secondary metabolite clusters. The software deals with large data coming in various forms such as GenBank, fasta etc. When dealing with such data it is important to write effective programs for faster processing.
“antiSMASH” uses Biopython’s SeqRecord object to deal with the data. The current “antiSMASH” code has some drawbacks in the way it is implemented. This project proposal is to make an abstraction layer for “antiSMASH” to unify the access to different qualifiers/features entries. The existing code has some drawbacks by the way it is implemented. A lot of code duplication prevails in various parts of the code base. The new API layer will overcome the cons of the existing code and minimize the code duplication.
License
This work is licensed under a Creative
Commons
Attribution-ShareAlike 4.0 International License.
Author Information
| # | Name | Institute / Affiliation |
|---|---|---|
| 1 | S.Aditya | SRM INSTITUTE OF TECHNOLOGY |
| 2 | N.Dinesh Reddy | SRM INSTITUTE OF TECHNOLOGY |
| 3 | Y.Srinath | SRM INSTITUTE OF TECHNOLOGY |
| 4 | Shamela Rizwana | SRM INSTITUTE OF TECHNOLOGY |
How to Cite
Use the following formats to cite this article in your research.
APA Style
S.Aditya, Reddy, N.Dinesh, Y.Srinath, & Rizwana, Shamela (2018). Code analyser for Bioinformatics. International Journal of Advance Research and Innovative Ideas In Education, 4(2), 3684-3687.
MLA Style
S.Aditya, et al. "Code analyser for Bioinformatics." International Journal of Advance Research and Innovative Ideas In Education, vol. 4, no. 2, 2018, pp. 3684-3687.
IEEE Style
S.Aditya, N.Dinesh Reddy, Y.Srinath, and Shamela Rizwana, "Code analyser for Bioinformatics," International Journal of Advance Research and Innovative Ideas In Education, vol. 4, no. 2, pp. 3684-3687, 2018.
Vancouver Style
S.Aditya, Reddy N.Dinesh, Y.Srinath, Rizwana Shamela. Code analyser for Bioinformatics. International Journal of Advance Research and Innovative Ideas In Education. 2018;4(2):3684-3687.
Harvard Style
S.Aditya, Reddy, N.Dinesh, Y.Srinath, & Rizwana, Shamela (2018) 'Code analyser for Bioinformatics', International Journal of Advance Research and Innovative Ideas In Education, 4(2), pp. 3684-3687.
Chicago Style
S.Aditya, et al. "Code analyser for Bioinformatics." International Journal of Advance Research and Innovative Ideas In Education 4, no. 2 (2018): 3684-3687.
Turabian Style
S.Aditya, et al. "Code analyser for Bioinformatics." International Journal of Advance Research and Innovative Ideas In Education 4, no. 2 (2018): 3684-3687.
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